biomart

LOW

maintainer mschu 1 votes scanned 2026-11-01 00:21:48.120785

View on AUR

Why flagged

The source is a legitimate project tarball from the official EMBL-EBI host, which is plausibly the project's own infrastructure; building from official project sources is normal AUR packaging, even if the host is not on a whitelist.

Triggered rules

Low AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a legitimate project tarball from the official EMBL-EBI host, which is plausibly the project's own infrastructure; building from official project sources is normal AUR packaging, even if the host is not on a whitelist.

1 higher static finding superseded - not the current verdict (shown for transparency)

Medium source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:10 source=('ftp://ftp.ebi.ac.uk/pub/software/biomart/martj_current/martj-bin.tar.gz')

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Michael Schubert <mschu.dev at google mail>
    
      2pkgname=biomart
    
      3pkgver=0.8
    
      4pkgrel=1
    
      5pkgdesc="A query-oriented data management system"
    
      6arch=('i686' 'x86_64')
    
      7url="http://www.biomart.org/"
    
      8license=('LGPL')
    
      9depends=('java-runtime')
    
      10source=('ftp://ftp.ebi.ac.uk/pub/software/biomart/martj_current/martj-bin.tar.gz')
    
      11sha256sums=('a506f3632e61ec721494e7c43194ab6e807808cd087b8b82443eb0e8b3dcc1db')
    
      12
    
      13package() {
    
      14  mkdir -p "$pkgdir"/opt/biomart
    
      15  cp -r "$srcdir"/martj-bin/* "$pkgdir"/opt/biomart/
    
      16
    
      17  mkdir -p "$pkgdir"/usr/bin
    
      18  for L in martbuilder marteditor martexplorer martregistrydbtool martrunner martshell; do
    
      19      ln -s /opt/biomart/bin/$L.sh "$pkgdir"/usr/bin/$L
    
      20  done
    
      21}
    
      22

Scan history

Scanned at (UTC)	Severity	Rules
2026-11-01 00:21:48	Low	2
2026-10-31 00:07:41	Low	2
2026-10-30 00:29:30	Low	2
2026-10-29 00:13:55	Low	2
2026-10-28 00:06:54	Low	2
2026-10-27 00:23:28	Low	2
2026-10-26 00:12:40	Low	2
2026-10-25 00:20:48	Low	2
2026-10-24 00:14:55	Low	2
2026-10-23 00:02:19	Low	2
2026-10-22 00:13:10	Low	2
2026-10-21 00:12:50	Low	2
2026-10-20 00:10:31	Low	2
2026-10-19 00:03:55	Low	2
2026-10-18 00:06:55	Low	2
2026-10-17 00:21:55	Low	2
2026-10-16 00:12:47	Low	2
2026-10-15 00:28:05	Low	2
2026-10-14 00:06:47	Low	2
2026-10-13 00:23:45	Low	2