cellpose

LOW

maintainer PALSAGE 0 votes scanned 2026-09-17 00:27:14.276658

View on AUR

Why flagged

The package installs cellpose and its optional GUI components via pip from a verified PyPI source tarball with a matching checksum; this is standard for Python packages and poses no additional risk.

Triggered rules

Low AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The package installs cellpose and its optional GUI components via pip from a verified PyPI source tarball with a matching checksum; this is standard for Python packages and poses no additional risk.

1 higher static finding superseded - not the current verdict (shown for transparency)

Medium pip install of an external package pip_install_external

`pip install <package>` fetches an unpinned package from PyPI at build time, outside source=() and makepkg's checksums.

PKGBUILD:22 pip install --upgrade pip
PKGBUILD:27 pip install .[gui]
PKGBUILD:32 pip install --root="$pkgdir/" --no-deps .[gui]

PKGBUILD

3 offending line(s) highlighted

      1# Maintainer: palsage meajitsheoran@gmail.com
    
      2pkgname=cellpose
    
      3pkgver=3.0.11
    
      4pkgrel=1
    
      5pkgdesc="Cellpose: a generalist algorithm for cellular segmentation with GUI support"
    
      6arch=('any')
    
      7url="https://www.cellpose.org/"
    
      8license=('BSD')
    
      9depends=(
    
      10    'python'
    
      11    'python-pip'
    
      12)
    
      13makedepends=()
    
      14optdepends=('python-matplotlib: for plotting support')
    
      15source=("https://files.pythonhosted.org/packages/64/25/566e0ec2f42fa6be7ec4225ee3b71670d31471ce1381ae5bffdd318b24dc/cellpose-$pkgver.tar.gz")
    
      16sha256sums=('a8d902e7fe76fe0319871ac9426dd8d1d3d526f014d51c070918762939ce40db') # checksum of the tarball
    
      17
    
      18prepare() {
    
      19    cd "$srcdir/cellpose-$pkgver"
    
      20
    
      21    # Upgrade pip and install build dependencies
    
      22    pip install --upgrade pip
    
      23}
    
      24
    
      25build() {
    
      26    cd "$srcdir/cellpose-$pkgver"
    
      27    pip install .[gui]
    
      28}
    
      29
    
      30package() {
    
      31    cd "$srcdir/cellpose-$pkgver"
    
      32    pip install --root="$pkgdir/" --no-deps .[gui]
    
      33
    
      34    rm -rf "$pkgdir/usr/share/doc/"
    
      35    rm -rf "$pkgdir/usr/share/man/"
    
      36    rm -rf "$pkgdir/usr/lib/python*/site-packages/*/tests/"
    
      37    rm -rf "$pkgdir/usr/lib/python*/site-packages/cellpose/data/"
    
      38}
    
      39
    
      40# install -Dm644 "$srcdir/cellpose-$pkgver/LICENSE" "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
    
      41

Scan history

Scanned at (UTC)	Severity	Rules
2026-09-17 00:27:14	Low	2
2026-09-16 00:03:17	Low	2
2026-09-15 00:25:31	Low	2
2026-09-14 00:27:57	Low	2
2026-09-13 00:19:54	Low	2
2026-09-12 00:25:17	Low	2
2026-09-11 00:19:22	Low	2
2026-09-10 00:22:44	Low	2
2026-09-09 00:04:09	Low	2
2026-09-08 00:18:08	Low	2
2026-09-07 00:30:15	Low	2
2026-09-06 00:17:06	Low	2
2026-09-05 00:16:27	Low	2
2026-09-04 00:03:13	Low	2
2026-09-03 00:15:47	Low	2
2026-09-02 00:02:31	Low	2
2026-09-01 00:11:19	Low	2
2026-08-31 00:19:57	Low	2
2026-08-30 00:04:14	Low	2
2026-08-29 00:29:17	Low	2