circos

LOW
maintainer tdy 2 votes scanned 2026-09-17 00:27:14.276658
View on AUR
Why flagged

The source URL uses a non-standard host pattern but resolves to the project's own official domain (circos.ca), and the download is a standard source tarball for building the software, which is a normal and safe AUR practice.

Triggered rules

Low AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source URL uses a non-standard host pattern but resolves to the project's own official domain (circos.ca), and the download is a standard source tarball for building the software, which is a normal and safe AUR practice.

1 higher static finding superseded - not the current verdict (shown for transparency)
Medium source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

  • PKGBUILD:40 source=(http://$pkgname.ca/distribution/$pkgname-${pkgver/_/-}.tgz)

PKGBUILD

1 offending line(s) highlighted
1# Maintainer: Tim Yang <protonmail = timdyang>
2
3pkgname=circos
4pkgver=0.69_9
5pkgrel=1
6pkgdesc="A software package for visualizing data in a circular layout"
7arch=(any)
8url=http://circos.ca
9license=(GPL)
10depends=(
11 perl-carp
12 perl-clone
13 perl-config-general
14 perl-data-dumper
15 perl-digest-md5
16 perl-file-temp
17 perl-font-ttf
18 perl-gd
19 perl-getopt-long
20 perl-list-moreutils
21 perl-math-bezier
22 perl-math-round
23 perl-math-complex
24 perl-math-vecstat
25 perl-memoize
26 perl-params-validate
27 perl-pod-usage
28 perl-readonly
29 perl-regexp-common
30 perl-set-intspan
31 perl-statistics-basic
32 perl-storable
33 perl-svg
34 perl-text-balanced
35 perl-text-format
36 perl-time-hires
37)
38optdepends=('circos-docs: tutorials'
39 'circos-tools: addons')
40source=(http://$pkgname.ca/distribution/$pkgname-${pkgver/_/-}.tgz)
41noextract=($pkgname-${pkgver/_/-}.tgz)
42sha256sums=(34d8d7ebebf3f553d62820f8f4a0a57814b610341f836b4740c46c3057f789d2)
43
44package() {
45 # dist
46 bsdtar -xf $pkgname-${pkgver/_/-}.tgz -C "$pkgdir" \
47 -s ":^$pkgname-${pkgver/_/-}:opt/$pkgname:" \
48 $pkgname-${pkgver/_/-}/{bin,data,error,etc,fonts,lib,tiles}
49
50 # docs
51 bsdtar -xf $pkgname-${pkgver/_/-}.tgz -C "$pkgdir" \
52 -s ":^$pkgname-${pkgver/_/-}:usr/share/doc/$pkgname:" \
53 $pkgname-${pkgver/_/-}/{example,README,CITATION}
54
55 # sanitize
56 rm -f "$pkgdir"/opt/$pkgname/bin/{$pkgname.exe,compile.{bat,make}}
57 # find "$pkgdir" -exec sh -c \
58 # "file '{}' | grep -qE 'ELF|executable|directory' && chmod 755 '{}' || chmod 644 '{}'" \;
59 find "$pkgdir" -exec sh -c "ls -Fd '{}' | grep -q '.*[/\*]$' && chmod 755 '{}' || chmod 644 '{}'" \;
60 chown -R root:root "$pkgdir"
61
62 # symlinks
63 install -m 755 -d "$pkgdir"/usr/bin/
64 ln -sf /opt/$pkgname/bin/$pkgname "$pkgdir"/usr/bin/
65 ln -sf /opt/$pkgname/bin/gddiag "$pkgdir"/usr/bin/
66}
67

Scan history

Scanned at (UTC)SeverityRules
2026-09-17 00:27:14 Low 2
2026-09-16 00:03:17 Low 2
2026-09-15 00:25:31 Low 2
2026-09-14 00:27:57 Low 2
2026-09-13 00:19:54 Low 2
2026-09-12 00:25:17 Low 2
2026-09-11 00:19:22 Low 2
2026-09-10 00:22:44 Low 2
2026-09-09 00:04:09 Low 2
2026-09-08 00:18:08 Low 2
2026-09-07 00:30:15 Low 2
2026-09-06 00:17:06 Low 2
2026-09-05 00:16:27 Low 2
2026-09-04 00:03:13 Low 2
2026-09-03 00:15:47 Low 2
2026-09-02 00:02:31 Low 2
2026-09-01 00:11:19 Low 2
2026-08-31 00:19:57 Low 2
2026-08-30 00:04:14 Low 2
2026-08-29 00:29:17 Low 2

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