clustal-omega

maintainer Rhinoceros · 12 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is a tarball from an archived version of the official project website via web.archive.org, which is a reliable archival service; the package builds from the project's own source, posing no active threat.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a tarball from an archived version of the official project website via web.archive.org, which is a reliable archival service; the package builds from the project's own source, posing no active threat.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:15 source=("https://web.archive.org/web/20251211035433/http://www.clustal.org/omega/${pkgname}-${pkgver}.tar.gz")

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Rhinoceros <https://aur.archlinux.org/account/rhinoceros>
    
      2# Contributor: talavis <aur at talavis eu>
    
      3# Contributor: Kevin Dodd <jesin00 at gmail dot com>
    
      4
    
      5pkgname=clustal-omega
    
      6pkgver=1.2.4
    
      7pkgrel=1
    
      8pkgdesc='Protein sequence alignment program'
    
      9arch=('i686' 'x86_64')
    
      10#url='http://www.clustal.org/omega/'
    
      11url='https://web.archive.org/web/20251211035433/http://www.clustal.org/omega/'
    
      12license=('GPL-2.0-or-later')
    
      13depends=('glib2' 'argtable')
    
      14#source=("http://www.clustal.org/omega/${pkgname}-${pkgver}.tar.gz")
    
      15source=("https://web.archive.org/web/20251211035433/http://www.clustal.org/omega/${pkgname}-${pkgver}.tar.gz")
    
      16options=(libtool staticlibs)
    
      17sha1sums=('9ff2c88df0f488de61f80d997198700407ac6c04')
    
      18
    
      19build() {
    
      20	cd "$srcdir/$pkgname-$pkgver"
    
      21	./configure --prefix=/usr || return
    
      22	make
    
      23}
    
      24
    
      25package() {
    
      26	cd "$srcdir/$pkgname-$pkgver"
    
      27	make DESTDIR="$pkgdir" install
    
      28}
    
      29

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2