dna-nn

LOW

maintainer imjiaoyuan 0 votes scanned 2026-10-08 16:09:18.783063

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Uploaded within the last 14 days with 2 or fewer community votes — little peer review so far.

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Uploaded within the last 14 days with 2 or fewer community votes — little peer review so far.

PKGBUILD

      1# Maintainer: imjiaoyuan <imjiaoyuan@gmail.com>
    
      2# Upstream ships no LICENSE file; the licence text in the tree is the MIT grant
    
      3# heading the bundled KANN headers, so that is what gets installed.
    
      4
    
      5pkgname=dna-nn
    
      6pkgver=0.1
    
      7pkgrel=1
    
      8pkgdesc="Deep-learning models for annotating satellite DNA in long assemblies"
    
      9arch=('x86_64')
    
      10url="https://github.com/lh3/dna-nn"
    
      11license=('MIT')
    
      12depends=('glibc' 'zlib')
    
      13source=("$pkgname-$pkgver.tar.gz::$url/archive/v$pkgver.tar.gz")
    
      14sha256sums=('bac26a25ad9e0315351b170bc33ab4e41b7573818fd9527b661f882b96ae0a8a')
    
      15
    
      16build() {
    
      17    cd "$srcdir/$pkgname-$pkgver"
    
      18    make
    
      19}
    
      20
    
      21package() {
    
      22    cd "$srcdir/$pkgname-$pkgver"
    
      23    install -Dm755 gen-fq "$pkgdir/usr/bin/gen-fq"
    
      24    install -Dm755 dna-cnn "$pkgdir/usr/bin/dna-cnn"
    
      25    install -Dm755 dna-brnn "$pkgdir/usr/bin/dna-brnn"
    
      26    # the pre-trained (ATTCC)n / alpha-satellite model the README uses
    
      27    install -Dm644 models/attcc-alpha.knm \
    
      28        "$pkgdir/usr/share/$pkgname/models/attcc-alpha.knm"
    
      29    install -d "$pkgdir/usr/share/licenses/$pkgname"
    
      30    awk 'NR==1,/^\*\//' kann.h > "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
    
      31}
    
      32

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Scanned at (UTC)	Severity	Rules
2026-10-08 16:09:18	Low	1