dnarates

maintainer malacology · 0 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is a tarball from the project's official academic host (illinois.edu) for a scientific tool; building from source is normal AUR practice, and the host, while not whitelisted, is plausibly legitimate and associated with the author.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a tarball from the project's official academic host (illinois.edu) for a scientific tool; building from source is normal AUR practice, and the host, while not whitelisted, is plausibly legitimate and associated with the author.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:14 source=("${pkgname}-${pkgver}.tgz::https://www.life.illinois.edu/gary/programs/DNArates/DNArates_$pkgver.tar.gz"

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Guoyi Zhang <myname at malacology dot net>
    
      2
    
      3pkgname=dnarates
    
      4_pkg=DNArates
    
      5pkgver=1.1.0
    
      6pkgrel=0
    
      7arch=('x86_64')
    
      8pkgdesc="estimating site-specific nucleotide substitution rates by maximum likelihood \
    
      9	 https://doi.org/10.1093/nar/22.17.3485"
    
      10url='https://www.life.illinois.edu/gary/programs/DNArates.html'
    
      11license=('LicenseRef-unknow')
    
      12depends=('glibc')
    
      13makedepends=('gcc')
    
      14source=("${pkgname}-${pkgver}.tgz::https://www.life.illinois.edu/gary/programs/DNArates/DNArates_$pkgver.tar.gz"
    
      15	"1.1.0.patch")
    
      16sha1sums=('889037be0b9330712084ee6621bd488c9287c073'
    
      17          'cf36569312f7b72686aa26a958836d931ad79853')
    
      18
    
      19prepare() {
    
      20  cd $srcdir/${_pkg}_$pkgver
    
      21  patch -p1 < $srcdir/1.1.0.patch
    
      22}
    
      23
    
      24build() {
    
      25  cd $srcdir/${_pkg}_$pkgver/source
    
      26  gcc -o $_pkg $_pkg.c -lm
    
      27}
    
      28
    
      29package() {
    
      30  cd $srcdir/${_pkg}_$pkgver
    
      31  # binary
    
      32  install -Dm 755 source/$_pkg $pkgdir/usr/bin/$_pkg 
    
      33  # docs
    
      34  install -Dm 644 docs/*.txt $pkgdir/usr/share/doc/$pkgname/manual.txt  
    
      35}
    
      36

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2