fastdnaml

LOW

maintainer malacology 0 votes scanned 2026-09-17 00:27:14.276658

View on AUR

Why flagged

The source is downloaded from the original project's official academic website, which is plausibly the project's own infrastructure, and the package builds from source without executing unreviewed remote code.

Triggered rules

Low AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is downloaded from the original project's official academic website, which is plausibly the project's own infrastructure, and the package builds from source without executing unreviewed remote code.

1 higher static finding superseded - not the current verdict (shown for transparency)

Medium source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:15 source=("${pkgname}-${pkgver}.tgz::https://www.life.illinois.edu/gary/programs/${_pkg}/${_pkg}_$pkgver.tar.gz")

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Guoyi Zhang <myname at malacology dot net>
    
      2
    
      3pkgname=fastdnaml
    
      4_pkg=fastDNAml
    
      5pkgver=1.2.2
    
      6pkgrel=0
    
      7arch=('x86_64')
    
      8pkgdesc="A tool for construction of phylogenetic trees of DNA sequences \
    
      9	 using maximum likelihood \
    
      10	 https://doi.org/10.1093/bioinformatics/10.1.41"
    
      11url='https://www.life.illinois.edu/gary/programs/fastDNAml.html'
    
      12license=('GPL-2.0-only')
    
      13depends=('glibc' 'bash')
    
      14makedepends=('gcc' 'make')
    
      15source=("${pkgname}-${pkgver}.tgz::https://www.life.illinois.edu/gary/programs/${_pkg}/${_pkg}_$pkgver.tar.gz")
    
      16sha1sums=('78197cbd760163f65085ac80c36d4286a1f29e34')
    
      17
    
      18build() {
    
      19  cd $srcdir/${_pkg}_$pkgver/source
    
      20  make
    
      21}
    
      22
    
      23package() {
    
      24  # binary
    
      25  cd $srcdir/${_pkg}_$pkgver/source
    
      26  install -Dm 755 $_pkg $pkgdir/usr/bin/$_pkg
    
      27  # scripts
    
      28  cd $srcdir/${_pkg}_$pkgver/scripts
    
      29  for sh in $(ls *)
    
      30do
    
      31  install -Dm 644 $sh $pkgdir/usr/share/$pkgname/$sh
    
      32done  
    
      33  # docs
    
      34  cd $srcdir/${_pkg}_$pkgver/docs
    
      35  for txt in $(ls *.txt)
    
      36do
    
      37  install -Dm 644 $txt $pkgdir/usr/share/doc/$pkgname/$txt
    
      38done  
    
      39}
    
      40

Scan history

Scanned at (UTC)	Severity	Rules
2026-09-17 00:27:14	Low	2
2026-09-16 00:03:17	Low	2
2026-09-15 00:25:31	Low	2
2026-09-14 00:27:57	Low	2
2026-09-13 00:19:54	Low	2
2026-09-12 00:25:17	Low	2
2026-09-11 00:19:22	Low	2
2026-09-10 00:22:44	Low	2
2026-09-09 00:04:09	Low	2
2026-09-08 00:18:08	Low	2
2026-09-07 00:30:15	Low	2
2026-09-06 00:17:06	Low	2
2026-09-05 00:16:27	Low	2
2026-09-04 00:03:13	Low	2
2026-09-03 00:15:47	Low	2
2026-09-02 00:02:31	Low	2
2026-09-01 00:11:19	Low	2
2026-08-31 00:19:57	Low	2
2026-08-30 00:04:14	Low	2
2026-08-29 00:29:17	Low	2