gblocks

maintainer malacology · 1 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is a prebuilt tarball from a project-specific academic host (molevol-ibe.csic.es), which is not on the standard whitelist but plausibly the official source for this academic software; the package installs only a binary and documentation, with no obfuscated code or remote execution, making the realistic worst-case impact low.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a prebuilt tarball from a project-specific academic host (molevol-ibe.csic.es), which is not on the standard whitelist but plausibly the official source for this academic software; the package installs only a binary and documentation, with no obfuscated code or remote execution, making the realistic worst-case impact low.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:17 source=("https://molevol-ibe.csic.es/${_pkgname}/${_pkgname}_${pkgver}_Linux.tar.gz")

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Guoyi（"malacology"）<guoyizhang@malacology.net>
    
      2# Contributor: Guoyi（"malacology"）<guoyizhang@malacology.net>
    
      3# Contributor: Roberto Rossini ("robymetallo") <roberto.rossini.9533@student.uu.se>
    
      4
    
      5pkgname=gblocks
    
      6_pkgname=Gblocks
    
      7provides=("gblocks")
    
      8pkgver=1.0
    
      9pkgrel=1
    
      10pkgdesc="A program written in ANSI C language that eliminates poorly aligned \
    
      11	 positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334"
    
      12url='https://www.biologiaevolutiva.org/jcastresana/Gblocks.html'
    
      13arch=('x86_64')
    
      14license=('unknown')
    
      15depends=('glibc')
    
      16makedepends=('tar')
    
      17source=("https://molevol-ibe.csic.es/${_pkgname}/${_pkgname}_${pkgver}_Linux.tar.gz")
    
      18sha256sums=('e899015c8c6583fd6c6799539af31d55a108d7d951c992930f8c452cca371c89')
    
      19
    
      20prepare() {
    
      21  tar -xvf ${_pkgname}_${pkgver}_Linux.tar
    
      22}
    
      23
    
      24package() {
    
      25  install -Dm755 ${_pkgname}_${pkgver}_Linux/$_pkgname "${pkgdir}/usr/bin/${_pkgname}"
    
      26  install -Dm644 ${_pkgname}_${pkgver}_Linux/Documentation/Gblocks_documentation.html  $pkgdir/usr/share/doc/$_pkgname/Gblocks_documentation.html
    
      27}
    
      28

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2