gmap-gsnap

LOW

maintainer orphaned 3 votes scanned 2026-11-01 00:21:48.120785

View on AUR

Why flagged

The source is a tarball from the project's official domain (gene.com), which is plausibly the project's own infrastructure; building from source is normal for AUR packages, even if the host is not on a whitelist.

Triggered rules

Low AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a tarball from the project's official domain (gene.com), which is plausibly the project's own infrastructure; building from source is normal for AUR packages, even if the host is not on a whitelist.

1 higher static finding superseded - not the current verdict (shown for transparency)

Medium source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:13 source=("http://research-pub.gene.com/gmap/src/$pkgname-$_version.tar.gz")

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Ben Booth <benwbooth@gmail.com>
    
      2pkgname=gmap-gsnap
    
      3_version=2019-03-15
    
      4pkgver=2019.03.15
    
      5pkgrel=1
    
      6epoch=
    
      7pkgdesc="A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program"
    
      8arch=("i686" "x86_64")
    
      9url="http://research-pub.gene.com/gmap/"
    
      10license=('custom')
    
      11depends=('perl')
    
      12options=()
    
      13source=("http://research-pub.gene.com/gmap/src/$pkgname-$_version.tar.gz")
    
      14md5sums=('f82cc84c3ce268b6315afec1118e7269')
    
      15
    
      16build() {
    
      17	cd "$srcdir/gmap-$_version"
    
      18	./configure --prefix=/usr
    
      19	make
    
      20}
    
      21
    
      22# disable tests since some of them are currently broken
    
      23#check() {
    
      24#	cd "$srcdir/gmap-$_version"
    
      25#	make -k check
    
      26#}
    
      27
    
      28package() {
    
      29	cd "$srcdir/gmap-$_version"
    
      30	make DESTDIR="$pkgdir/" install
    
      31	install -D -m644 COPYING "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
    
      32}
    
      33

Scan history

Scanned at (UTC)	Severity	Rules
2026-11-01 00:21:48	Low	2
2026-10-31 00:07:41	Low	2
2026-10-30 00:29:30	Low	2
2026-10-29 00:13:55	Low	2
2026-10-28 00:06:54	Low	2
2026-10-27 00:23:28	Low	2
2026-10-26 00:12:40	Low	2
2026-10-25 00:20:48	Low	2
2026-10-24 00:14:55	Low	2
2026-10-23 00:02:19	Low	2
2026-10-22 00:13:10	Low	2
2026-10-21 00:12:50	Low	2
2026-10-20 00:10:31	Low	2
2026-10-19 00:03:55	Low	2
2026-10-18 00:06:55	Low	2
2026-10-17 00:21:55	Low	2
2026-10-16 00:12:47	Low	2
2026-10-15 00:28:05	Low	2
2026-10-14 00:06:47	Low	2
2026-10-13 00:23:45	Low	2