gromacs-charmm36

maintainer hseara · 1 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is a non-whitelisted but plausibly official academic project host; the downloaded tarball contains only force field data files, not executable code, so the worst-case impact of a compromised source is limited to data tampering.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a non-whitelisted but plausibly official academic project host; the downloaded tarball contains only force field data files, not executable code, so the worst-case impact of a compromised source is limited to data tampering.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:11 source=(http://mackerell.umaryland.edu/download.php?filename=CHARMM_ff_params_files/charmm36-feb2021.ff.tgz)

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Hector <hsearaDOTatDOTgmailDOTcom>
    
      2
    
      3pkgname=gromacs-charmm36
    
      4pkgver=202102
    
      5pkgrel=1
    
      6pkgdesc='CHARMM36 force field in GROMACS format.'
    
      7url='http://mackerell.umaryland.edu/charmm_ff.shtml#gromacs'
    
      8license=("GPL")
    
      9arch=('any')
    
      10depends=("gromacs")
    
      11source=(http://mackerell.umaryland.edu/download.php?filename=CHARMM_ff_params_files/charmm36-feb2021.ff.tgz)
    
      12sha256sums=('480637fddcf47d900d7dcf8240cc8fbcde4178e988913c95126cbfed99775ce9')
    
      13
    
      14
    
      15package() {
    
      16  msg2 "Installing charmm36 forcefield files in Gromacs"
    
      17  mkdir -p ${pkgdir}/usr/share/gromacs/top/charmm36.ff
    
      18  cp  ${srcdir}/charmm36-*/* ${pkgdir}/usr/share/gromacs/top/charmm36.ff/
    
      19  chmod 644 ${pkgdir}/usr/share/gromacs/top/charmm36.ff/*
    
      20}
    
      21

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2