hmmer

MEDIUM

maintainer mschu 11 votes scanned 2026-10-19 21:26:37.112660

View on AUR

Why flagged

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

Triggered rules

Medium source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:13 source=(hmmer-$pkgver-release.tar.gz::https://eddylab.org/software/hmmer/hmmer-$pkgver.tar.gz)

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Michael Schubert <mschu.dev at gmail> github.com/mschubert/PKGBUILDs
    
      2# Contributor: Damir Perisa <damir.perisa@bluewin.ch>
    
      3# Contributor: Thomas Dziedzic <gostrc at gmail>
    
      4# Contributor: Josh Marshall <jrmarsha@mtu.edu>
    
      5pkgname=hmmer
    
      6pkgver=3.4
    
      7pkgrel=2
    
      8pkgdesc="Profile hidden Markov models (HMMs) for database searching using consensus sequences"
    
      9arch=('i686' 'x86_64')
    
      10license=('BSD-3-Clause')
    
      11checkdepends=('python')
    
      12url="http://hmmer.org/"
    
      13source=(hmmer-$pkgver-release.tar.gz::https://eddylab.org/software/hmmer/hmmer-$pkgver.tar.gz)
    
      14sha256sums=('ca70d94fd0cf271bd7063423aabb116d42de533117343a9b27a65c17ff06fbf3')
    
      15
    
      16build() {
    
      17  cd "$pkgname-$pkgver"
    
      18  ./configure --prefix=/usr
    
      19  make
    
      20}
    
      21
    
      22check() {
    
      23  cd "$pkgname-$pkgver"
    
      24  make check
    
      25}
    
      26
    
      27package() {
    
      28  cd "$pkgname-$pkgver"
    
      29  make prefix="$pkgdir/usr" install
    
      30  install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
    
      31  install -Dm644 easel/LICENSE "$pkgdir/usr/share/licenses/$pkgname/easel.LICENSE"
    
      32}
    
      33

Changes since previous scan

--- PKGBUILD @ 2026-09-07 17:15
+++ PKGBUILD @ 2026-10-19 21:26
@@ -4,13 +4,14 @@
 # Contributor: Josh Marshall <jrmarsha@mtu.edu>
 pkgname=hmmer
 pkgver=3.4
-pkgrel=1
+pkgrel=2
 pkgdesc="Profile hidden Markov models (HMMs) for database searching using consensus sequences"
 arch=('i686' 'x86_64')
-license=('GPL')
+license=('BSD-3-Clause')
+checkdepends=('python')
 url="http://hmmer.org/"
-source=(https://github.com/EddyRivasLab/hmmer/archive/refs/tags/hmmer-$pkgver.tar.gz)
-sha256sums=('298cbe76ccc516a86a85cbe2e91690074deed1d66b19d88ff6829a837befd85e')
+source=(hmmer-$pkgver-release.tar.gz::https://eddylab.org/software/hmmer/hmmer-$pkgver.tar.gz)
+sha256sums=('ca70d94fd0cf271bd7063423aabb116d42de533117343a9b27a65c17ff06fbf3')
 
 build() {
   cd "$pkgname-$pkgver"
@@ -26,5 +27,7 @@
 package() {
   cd "$pkgname-$pkgver"
   make prefix="$pkgdir/usr" install
+  install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
+  install -Dm644 easel/LICENSE "$pkgdir/usr/share/licenses/$pkgname/easel.LICENSE"
 }
 

Scan history

Scanned at (UTC)	Severity	Rules
2026-10-19 21:26:37	Medium	1
2026-09-07 17:15:15	Clean	0
2026-06-20 00:18:46	Medium	1
2026-06-19 23:51:18	Clean	2
2026-06-19 19:07:35	Low	2
2026-06-18 16:11:54	Medium	1