igv-web

maintainer Rainbowu · 0 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The package downloads a source archive from the project's official domain and applies patches; the npm install fetches declared dependencies for building a web frontend, which is normal for such packages, and all sources are checksummed.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-2507) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The package downloads a source archive from the project's official domain and applies patches; the npm install fetches declared dependencies for building a web frontend, which is normal for such packages, and all sources are checksummed.

2 higher static findings superseded - not the current verdict (shown for transparency)

MEDIUM npm/yarn/pnpm install of an undeclared external package npm_install_external

Runs `npm/yarn/pnpm install <package>` for a package not in source=(), pulling unpinned, unreviewed code at build time. Severity downgraded: the package declares/looks like a Node.js consumer, where build-time installs are expected.

PKGBUILD:37 npm install bootstrap@5.3.3 \

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:17 source=("https://igv.org/app-archive/igv-webapp.${pkgver}.zip"

PKGBUILD

2 offending line(s) highlighted

      1# Maintainer: Rongbo <wurongbo2012@hotmail.com>
    
      2
    
      3pkgname=igv-web
    
      4_pkgname=igv
    
      5pkgver=2.4.7
    
      6pkgrel=1
    
      7pkgdesc='A web application for exploring genomic datasets using igv.js'
    
      8arch=('any')
    
      9
    
      10url='https://igv.org/doc/webapp/'
    
      11license=('MIT')
    
      12keywords=('bioinformatics')
    
      13depends=('nginx')
    
      14makedepends=('npm')
    
      15
    
      16backup=("etc/nginx/conf.d/${pkgname}.conf")
    
      17source=("https://igv.org/app-archive/igv-webapp.${pkgver}.zip"
    
      18    "igv-web.patch"
    
      19    "igv-web.conf"
    
      20    "igvwebConfig.patch"
    
      21)
    
      22sha256sums=('0d02ba01df2e1ad3d10884d4267075d24b1950d54e3f0580c62c80b94257ed86'
    
      23            'b131c27b138880a92dd24fa4c4c1c99161ab2ff1ab268fa8f1637a585e7c40e2'
    
      24            '813c375ee0c763d38b66ea589dd9340b4f2c7ff8b969ab57ec13870cc0348a56'
    
      25            '2b0c9a51f42ae36ac7c50a01e7f923440fa56f9f63c14134d46ee497e6281fd9')
    
      26
    
      27options=('!debug' '!strip')
    
      28
    
      29prepare() {
    
      30    patch igv-webapp.${pkgver}/index.html -i ${pkgname}.patch
    
      31    patch igv-webapp.${pkgver}/igvwebConfig.js -i igvwebConfig.patch
    
      32    mkdir -p igv-webapp.${pkgver}/node_modules
    
      33}
    
      34
    
      35build() {
    
      36    cd igv-webapp.${pkgver}
    
      37    npm install bootstrap@5.3.3 \
    
      38	bootstrap-icons \
    
      39	jquery@3.5.1 \
    
      40	datatables.net-select-dt@1.3.1 \
    
      41	react-dom@16.14.0 \
    
      42	@jbrowse/react-circular-genome-view@1.7
    
      43
    
      44    echo "you can customize igvwebConfig.js in /srv/http/${pkgname}"
    
      45}
    
      46
    
      47package() {
    
      48    install -Dm644 ${pkgname}.conf ${pkgdir}/etc/nginx/conf.d/${pkgname}.conf
    
      49    install -dm755 ${pkgdir}/srv/http
    
      50    cp -r ${srcdir}/igv-webapp.${pkgver} ${pkgdir}/srv/http/${pkgname}
    
      51
    
      52    echo "you should include conf.d/ in /etc/nginx/nginx.conf http block"
    
      53}
    
      54

Changes since previous scan

--- PKGBUILD @ 2026-07-25 00:13
+++ PKGBUILD @ 2026-08-03 00:08
@@ -2,7 +2,7 @@
 
 pkgname=igv-web
 _pkgname=igv
-pkgver=2.4.3
+pkgver=2.4.7
 pkgrel=1
 pkgdesc='A web application for exploring genomic datasets using igv.js'
 arch=('any')
@@ -19,10 +19,10 @@
     "igv-web.conf"
     "igvwebConfig.patch"
 )
-sha256sums=('7b54efe1d918f8e5699e75cc3ca104a26e335da3c12c2fa29a9c2399ce08ce28'
+sha256sums=('0d02ba01df2e1ad3d10884d4267075d24b1950d54e3f0580c62c80b94257ed86'
             'b131c27b138880a92dd24fa4c4c1c99161ab2ff1ab268fa8f1637a585e7c40e2'
             '813c375ee0c763d38b66ea589dd9340b4f2c7ff8b969ab57ec13870cc0348a56'
-            '6e5e066941bda8a18b7251837661c9e370a8166e72231a33f4480a3a94fed11a')
+            '2b0c9a51f42ae36ac7c50a01e7f923440fa56f9f63c14134d46ee497e6281fd9')
 
 options=('!debug' '!strip')
 
@@ -40,6 +40,8 @@
 	datatables.net-select-dt@1.3.1 \
 	react-dom@16.14.0 \
 	@jbrowse/react-circular-genome-view@1.7
+
+    echo "you can customize igvwebConfig.js in /srv/http/${pkgname}"
 }
 
 package() {
@@ -47,10 +49,6 @@
     install -dm755 ${pkgdir}/srv/http
     cp -r ${srcdir}/igv-webapp.${pkgver} ${pkgdir}/srv/http/${pkgname}
 
-    echo "you should include conf.d/ in /etc/nginx/nginx.conf"
+    echo "you should include conf.d/ in /etc/nginx/nginx.conf http block"
 }
 
-post_install() {
-    echo "you can customize igvwebConfig.js in /srv/http/${pkgname}"
-}
-

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	3
2026-08-02 00:16:08	LOW	3
2026-08-01 00:11:18	LOW	3
2026-07-31 00:14:10	LOW	3
2026-07-30 00:17:23	LOW	3
2026-07-29 00:25:53	LOW	3
2026-07-28 00:07:28	LOW	3
2026-07-27 00:24:32	LOW	3
2026-07-26 00:07:32	LOW	3
2026-07-25 19:30:43	MEDIUM	2
2026-07-25 00:13:44	LOW	3
2026-07-24 00:02:28	LOW	3
2026-07-23 00:14:47	LOW	3
2026-07-22 00:29:32	LOW	3
2026-07-21 00:24:15	LOW	3
2026-07-20 00:19:49	LOW	3
2026-07-19 00:17:08	LOW	3
2026-07-18 00:14:48	LOW	3
2026-07-17 00:06:16	LOW	3
2026-07-16 00:05:41	LOW	3