igvtools

maintainer ianomic · 3 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is a versioned zip from the official project's data subdomain, used to build the package; it is not an unverifiable prebuilt executable or remote code execution, and the host, while not standard, is plausibly project-owned.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a versioned zip from the official project's data subdomain, used to build the package; it is not an unverifiable prebuilt executable or remote code execution, and the host, while not standard, is plausibly project-owned.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:13 ${pkgname}-${pkgver}.zip::https://data.broadinstitute.org/igv/projects/downloads/${pkgver%.*}/IGV_${pkgver}.zip

PKGBUILD

1 offending line(s) highlighted

      1# Contributor: Clint Valentine <valentine.clint@gmail.com>
    
      2# Maintainer: Ravi Kumar Kairi <kumarkairiravi@gmail.com>
    
      3pkgname=igvtools
    
      4_pkgname=IGV
    
      5pkgver=2.19.1
    
      6pkgrel=1
    
      7pkgdesc="IGV utilities for preprocessing bioinformatics data files"
    
      8arch=('any')
    
      9url="https://software.broadinstitute.org/software/igv"
    
      10license=('MIT')
    
      11depends=('jre-openjdk')
    
      12source=(
    
      13  ${pkgname}-${pkgver}.zip::https://data.broadinstitute.org/igv/projects/downloads/${pkgver%.*}/IGV_${pkgver}.zip
    
      14  "igvtools.sh"
    
      15  "igvtools_gui.sh"
    
      16)
    
      17sha256sums=('e7d7803cab4e12e84f5359a3d73915a45acc6d676151ca18e91fb2d39432b568'
    
      18            'd4cda10928d773dbc959a1cd5bb336aeecf95cb5e549b4560ba561c66f27c50a'
    
      19            '1bf610102219c0390d7d78e993110e1cdcb5aae571a79cfa54b093ee3c50ff7f')
    
      20
    
      21package() {
    
      22  install -d "${pkgdir}"/usr/share/java/igv/
    
      23  cp -rf IGV_${pkgver}/lib/*  "${pkgdir}"/usr/share/java/igv/
    
      24  install -Dm644 "${srcdir}"/${_pkgname}_${pkgver}/igvtools_readme.txt \
    
      25	  "${pkgdir}"/usr/share/doc/$pkgname/igvtools_readme.txt
    
      26  install -Dm755 "igvtools.sh"  "${pkgdir}"/usr/bin/igvtools
    
      27  install -Dm755 "igvtools_gui.sh"  "${pkgdir}"/usr/bin/igvtools_gui
    
      28}
    
      29

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2