jalview

maintainer pika02 · 11 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is a tarball from the project's official domain (jalview.org) hosting the project's own release files; building from this source is normal AUR packaging despite the non-whitelisted host.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a tarball from the project's official domain (jalview.org) hosting the project's own release files; building from this source is normal AUR packaging despite the non-whitelisted host.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:18 "http://www.jalview.org/getdown/release/install4j/1.8/jalview-${pkgver//./_}-unix-java_8.tar.gz"

PKGBUILD

1 offending line(s) highlighted

      1#!/bin/bash
    
      2
    
      3# Maintainer: pika02 <pikakolendo02 at gmail dot com>
    
      4# Contributor: PumpkinCheshire <me at pumpkincheshire dot com>
    
      5# Contributor: Felix Golatofski <contact@xdfr.de>
    
      6# Contributor: Stefan Seemayer <mail@semicolonsoftware.de>
    
      7
    
      8pkgname=jalview
    
      9pkgver=2.11.5.0
    
      10pkgrel=1
    
      11pkgdesc='Bioinformatics Multiple Alignment Editor'
    
      12arch=(any)
    
      13url='https://www.jalview.org/'
    
      14license=('GPL3')
    
      15depends=('java-runtime')
    
      16makedepends=('tar')
    
      17source=(
    
      18    "http://www.jalview.org/getdown/release/install4j/1.8/jalview-${pkgver//./_}-unix-java_8.tar.gz"
    
      19    'jalview'
    
      20    'jalview.desktop'
    
      21)
    
      22noextract=("jalview-${pkgver//./_}-unix-java_8.tar.gz")
    
      23sha256sums=('8e6da00cae9e655bdcf1d3c8e1b0eb2800e8f9b7c49922a64fd3b9e1b49db982'
    
      24            'dbe5edfa9b17a1f85083b5aae16ef7a186a0d0035e6a81761cf73d0e1121ce58'
    
      25            'fa870de0d4ec5be2dfc93405f7e618541737533a34705893274fdfea7dae0600')
    
      26
    
      27prepare() {
    
      28    mkdir -p ./$pkgname-$pkgver
    
      29    tar -xzvf ./*.tar.gz -C ./$pkgname-$pkgver --strip-components 1
    
      30}
    
      31
    
      32package() {
    
      33    install -Dm755 -t "$pkgdir/usr/bin/" "$pkgname"
    
      34    install -Dm644 -t "$pkgdir/usr/share/applications/" 'jalview.desktop'
    
      35
    
      36    install -Dm644 -t "$pkgdir/usr/share/java/$pkgname" "$srcdir/$pkgname-$pkgver/release/"*.jar
    
      37
    
      38    install -Dm644 "$srcdir/$pkgname-$pkgver/resource/jalview_logo.png" "$pkgdir/usr/share/pixmaps/jalview_logo.png"
    
      39    # install -Dm644 "$srcdir/$pkgname-$pkgver/resource/jalview_logos.ico" "$pkgdir/usr/share/pixmaps/jalview_logos.ico"
    
      40}
    
      41

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2