kinwalker

maintainer RaumZeit · 0 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is a tarball from the project's official academic host, which is not on the standard whitelist but is plausibly legitimate; building from project-owned infrastructure with patches for compatibility is normal AUR practice and poses low risk.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 90%): The source is a tarball from the project's official academic host, which is not on the standard whitelist but is plausibly legitimate; building from project-owned infrastructure with patches for compatibility is normal AUR practice and poses low risk.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:14 source=(http://www.bioinf.uni-leipzig.de/Software/Kinwalker/kinwalker.tar.gz

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
    
      2
    
      3pkgname=kinwalker
    
      4pkgver=2.0
    
      5pkgrel=1
    
      6pkgdesc="Compute cotranscriptional folding trajectories of RNAs"
    
      7arch=('x86_64' 'i686')
    
      8license=('Custom')
    
      9url="http://www.bioinf.uni-leipzig.de/Software/Kinwalker/"
    
      10depends=('viennarna')
    
      11optdepends=()
    
      12makedepends=()
    
      13provides=()
    
      14source=(http://www.bioinf.uni-leipzig.de/Software/Kinwalker/kinwalker.tar.gz
    
      15        0001-corrected-Makefile-in-order-to-work-with-ViennaRNA-2.patch
    
      16        0002-remove-redefinition-of-INF-energies.patch
    
      17        0003-remove-unnecessary-and-deprecated-wrong-declarations.patch
    
      18        0004-make-kinwalker-comply-to-stricter-g.patch
    
      19        0005-remove-all-the-remaining-unnecessary-stuff.patch
    
      20        0006-fix-bug-for-co-transcriptional-folding-with-dangles-.patch
    
      21        0007-Do-not-fail-on-using-B-heuristic.patch
    
      22        0008-Removed-findpath.h-and-cleaned-up-remnants-of-false-.patch
    
      23)
    
      24md5sums=( '7723b173de294ef96b86d94f4f6cbeb9'
    
      25          '2f92e91e58badff10d4fe697bca3abf0'
    
      26          'dba93e6fce292b6e9b9e7e0b667e6e6c'
    
      27          '9ae628a2c89ac2654813b87a54605966'
    
      28          '73489a3b0f68a5bbfd158b5ea06f422a'
    
      29          '39bd8b46857edd134671c30260dcc93c'
    
      30          'a6bab92d415092d4e47e08564ae9c48e'
    
      31          '285cfd82e05b9e0c69d0196089d82e3b'
    
      32          '4afda6634ea89393975b953ca7788497'
    
      33          )
    
      34
    
      35prepare() {
    
      36  cd "${srcdir}/kinwalker"
    
      37
    
      38  patch -p1 < ../0001-corrected-Makefile-in-order-to-work-with-ViennaRNA-2.patch
    
      39  patch -p1 < ../0002-remove-redefinition-of-INF-energies.patch
    
      40  patch -p1 < ../0003-remove-unnecessary-and-deprecated-wrong-declarations.patch
    
      41  patch -p1 < ../0004-make-kinwalker-comply-to-stricter-g.patch
    
      42  patch -p1 < ../0005-remove-all-the-remaining-unnecessary-stuff.patch
    
      43  patch -p1 < ../0006-fix-bug-for-co-transcriptional-folding-with-dangles-.patch
    
      44  patch -p1 < ../0007-Do-not-fail-on-using-B-heuristic.patch
    
      45  patch -p1 < ../0008-Removed-findpath.h-and-cleaned-up-remnants-of-false-.patch
    
      46}
    
      47
    
      48build() {
    
      49  cd "${srcdir}/kinwalker"
    
      50  make || return 1
    
      51}
    
      52
    
      53package() {
    
      54  cd "${srcdir}/kinwalker"
    
      55
    
      56  install -Dm755 kinwalker "${pkgdir}/usr/bin/kinwalker"
    
      57  install -Dm644 man/kinwalker.1 "${pkgdir}/usr/share/man/man1/kinwalker.1"
    
      58}
    
      59
    
      60

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2