mmseqs2-bin

LOW

maintainer imjiaoyuan 0 votes scanned 2026-08-20 17:11:42.006138

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Why flagged

Uploaded within the last 14 days with 2 or fewer community votes — little peer review so far.

Triggered rules

Low Few votes, recently uploaded zero_votes_recent

Uploaded within the last 14 days with 2 or fewer community votes — little peer review so far.

PKGBUILD

      1# Maintainer: imjiaoyuan <imjiaoyuan@gmail.com>
    
      2
    
      3pkgname=mmseqs2-bin
    
      4_pkgname=mmseqs
    
      5_tag=18-8cc5c
    
      6pkgver=18_8cc5c
    
      7pkgrel=2
    
      8pkgdesc="Ultra fast and sensitive sequence search and clustering suite"
    
      9arch=('x86_64')
    
      10url="https://github.com/soedinglab/mmseqs2"
    
      11license=('MIT')
    
      12depends=()
    
      13provides=("mmseqs2=${pkgver}")
    
      14conflicts=('mmseqs2')
    
      15options=('!strip' '!debug')
    
      16source=("${url}/releases/download/${_tag}/mmseqs-linux-avx2.tar.gz")
    
      17sha256sums=('bd9b0234da5949ad528d5b5f9ea4cda9c1e23dce14b46c0791d4d919a76e61ce')
    
      18
    
      19# Upstream ships a statically-linked binary (ldd: not a dynamic executable).
    
      20# The tarball keeps substitution matrices in ../matrices relative to bin/,
    
      21# which mmseqs resolves through its own real path, so that layout is
    
      22# preserved under /usr/share/mmseqs and /usr/bin/mmseqs is a symlink to it.
    
      23# Default matrices are embedded in the binary; the files only matter for
    
      24# explicit --sub-mat lookups.
    
      25
    
      26package() {
    
      27    install -Dm755 "${srcdir}/${_pkgname}/bin/${_pkgname}" "${pkgdir}/usr/share/mmseqs/bin/${_pkgname}"
    
      28    install -dm755 "${pkgdir}/usr/share/mmseqs/matrices"
    
      29    install -m644 "${srcdir}/${_pkgname}/matrices/"*.out "${pkgdir}/usr/share/mmseqs/matrices/"
    
      30    install -Dm644 "${srcdir}/${_pkgname}/LICENSE.md" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE.md"
    
      31    install -dm755 "${pkgdir}/usr/bin"
    
      32    ln -s "/usr/share/mmseqs/bin/${_pkgname}" "${pkgdir}/usr/bin/${_pkgname}"
    
      33}
    
      34

Changes since previous scan

--- PKGBUILD @ 2026-08-18 00:03
+++ PKGBUILD @ 2026-08-20 17:11
@@ -4,11 +4,11 @@
 _pkgname=mmseqs
 _tag=18-8cc5c
 pkgver=18_8cc5c
-pkgrel=1
-pkgdesc="Ultra fast and sensitive sequence search and clustering suite (precompiled binary)"
+pkgrel=2
+pkgdesc="Ultra fast and sensitive sequence search and clustering suite"
 arch=('x86_64')
 url="https://github.com/soedinglab/mmseqs2"
-license=('GPL3')
+license=('MIT')
 depends=()
 provides=("mmseqs2=${pkgver}")
 conflicts=('mmseqs2')

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-20 17:11:42	Low	1
2026-08-18 00:03:42	Clean	2
2026-08-17 15:36:47	Low	1
2026-08-17 05:35:16	Low	1