molblocks

maintainer orphaned · 0 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is downloaded from the project's official academic host, which is not whitelisted but plausibly legitimate; the package builds from source and installs binaries and data, posing low risk.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is downloaded from the project's official academic host, which is not whitelisted but plausibly legitimate; the package builds from source and installs binaries and data, posing low risk.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:12 source=("https://compbio.cs.princeton.edu/molblocks/molblocks.tar.gz"

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
    
      2
    
      3pkgname=molblocks
    
      4pkgver=0.1
    
      5pkgrel=1
    
      6pkgdesc="A suite to break small molecules into chemically meaningful fragments"
    
      7url="https://compbio.cs.princeton.edu/molblocks/"
    
      8license=("GPL3")
    
      9arch=(x86_64)
    
      10depends=(openbabel2)
    
      11makedepends=(gcc patch make)
    
      12source=("https://compbio.cs.princeton.edu/molblocks/molblocks.tar.gz"
    
      13        "fix_linking.patch")
    
      14sha1sums=('f9cf416d89a282e6dd75a114faef9aa822ded6a6'
    
      15          'ef8909111347af97ef4c70e296f6d881fbb2a892')
    
      16
    
      17prepare() {
    
      18  cd "${srcdir}/molblocks"
    
      19
    
      20  patch -Np0 -i "${srcdir}/fix_linking.patch"
    
      21}
    
      22
    
      23build() {
    
      24  cd "${srcdir}/molblocks"
    
      25
    
      26  make
    
      27}
    
      28
    
      29
    
      30package() {
    
      31  cd "${srcdir}/molblocks"
    
      32
    
      33  # create directories
    
      34  mkdir -p "${pkgdir}/usr/bin"
    
      35  mkdir -p "${pkgdir}/usr/share/molblocks"
    
      36
    
      37  # install binaries
    
      38  install -Dm755 "${srcdir}/molblocks/analyze" "${pkgdir}/usr/bin/mb-analyze"
    
      39  install -Dm755 "${srcdir}/molblocks/fragment" "${pkgdir}/usr/bin/mb-fragment"
    
      40
    
      41  # install data
    
      42  cp -r "${srcdir}/molblocks/exampleAntiNeopl" "${pkgdir}/usr/share/molblocks/"
    
      43  cp -r "${srcdir}/molblocks/exampleCephalosp" "${pkgdir}/usr/share/molblocks/"
    
      44  install -Dm644 "${srcdir}/molblocks/BRICS.txt" "${pkgdir}/usr/share/molblocks/BRICS.txt"
    
      45  install -Dm644 "${srcdir}/molblocks/CCQ.txt" "${pkgdir}/usr/share/molblocks/CCQ.txt"
    
      46  install -Dm644 "${srcdir}/molblocks/RECAP.txt" "${pkgdir}/usr/share/molblocks/RECAP.txt"
    
      47}
    
      48

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2