motifsampler

maintainer orphaned · 0 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is downloaded from the project's official academic host, which is plausibly legitimate despite not being on a standard domain; the package installs prebuilt binaries from the project's own release location, which is normal for AUR packages and poses no clear malicious behavior.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is downloaded from the project's official academic host, which is plausibly legitimate despite not being on a standard domain; the package installs prebuilt binaries from the project's own release location, which is normal for AUR packages and poses no clear malicious behavior.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:10 source_i686=("Linux-32.${pkgver}.tar.gz::https://homes.esat.kuleuven.be/~sistawww/bioi/thijs/download/linux_3.2/MotifSampler")

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: allencch <allencch at hotmail dot com>
    
      2pkgname=motifsampler
    
      3pkgver=3.2
    
      4pkgrel=1
    
      5pkgdesc="The Gibbs Motif Sampler for identifying motifs, conserved regions, in DNA or protein sequences"
    
      6arch=('i686' 'x86_64')
    
      7url="https://homes.esat.kuleuven.be/~sistawww/bioi/thijs/download.html"
    
      8license=('GPL')
    
      9
    
      10source_i686=("Linux-32.${pkgver}.tar.gz::https://homes.esat.kuleuven.be/~sistawww/bioi/thijs/download/linux_3.2/MotifSampler")
    
      11
    
      12source_x86_64=("Linux-64.${pkgver}.tar.gz::https://homes.esat.kuleuven.be/~sistawww/bioi/thijs/download/linux_x86-64/MotifSampler")
    
      13md5sums_i686=('c2867739e66744c43d6d0005f6d1d6c7')
    
      14md5sums_x86_64=('8555341389cee01efde2a3b2c2d475c7')
    
      15
    
      16package() {
    
      17    mkdir -p "${pkgdir}/usr/bin"
    
      18    mkdir -p "${pkgdir}/opt/MotifSampler"
    
      19
    
      20    if [ $CARCH == "i686" ] ; then
    
      21        _arch="32"
    
      22        unifiedcpp=unifiedcpp.linux
    
      23    else
    
      24        _arch="64"
    
      25        unifiedcpp=unifiedcpp.opteron
    
      26    fi
    
      27
    
      28    install -m755 Gibbs.x86_${_arch} seq.weights.pl $unifiedcpp wilcox.test "${pkgdir}/usr/bin"
    
      29    cp ChangeLog crp.fa readme.unified README "${pkgdir}/opt/MotifSampler"
    
      30}
    
      31

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2