msamanda-bin

maintainer levitsky · 0 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is hosted on the project's official domain (ms.imp.ac.at), which is plausibly the project's own infrastructure, and the package installs only data and binaries from that source; the non-whitelisted host is a false positive for risk, as the domain belongs to the research institute behind the software.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is hosted on the project's official domain (ms.imp.ac.at), which is plausibly the project's own infrastructure, and the package installs only data and binaries from that source; the non-whitelisted host is a false positive for risk, as the domain belongs to the research institute behind the software.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:14 source=("https://ms.imp.ac.at/index.php?file=msamanda/${_name}_${pkgver}.tar.gz")

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Lev Levitsky <levlev@mail.ru>
    
      2pkgname=msamanda-bin
    
      3provides=(msamanda percolator)
    
      4conflicts=(msamanda percolator percolator-bin)
    
      5_name="MSAmanda_Linux"
    
      6pkgver=3.0.21.049
    
      7pkgrel=1
    
      8pkgdesc="A scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins"
    
      9arch=('any')
    
      10url="http://ms.imp.ac.at/index.php?action=ms-amanda"
    
      11license=('custom')
    
      12depends=()
    
      13options=(!strip)
    
      14source=("https://ms.imp.ac.at/index.php?file=msamanda/${_name}_${pkgver}.tar.gz")
    
      15sha256sums=('2479fd56576b68bbc582d2117a2e6bffa67d8e9e2df538d156371c6bf82c8f86')
    
      16
    
      17package() {
    
      18    mkdir -p "$pkgdir/opt/MSAmanda"
    
      19    cp -rt "$pkgdir/opt/MSAmanda" "${srcdir}/${_name}_${pkgver}"/*
    
      20    mkdir -p "$pkgdir/usr/share/licenses/MSAmanda"
    
      21    mv "$pkgdir/opt/MSAmanda/license.txt" "$pkgdir/usr/share/licenses/MSAmanda"
    
      22    mkdir -p "$pkgdir/usr/bin"
    
      23    ln -st "${pkgdir}/usr/bin" /opt/MSAmanda/percolator/{percolator,qvality}
    
      24    ln -st "${pkgdir}/usr/bin" /opt/MSAmanda/MSAmanda
    
      25}
    
      26

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2