psmc

LOW

maintainer imjiaoyuan 0 votes scanned 2026-10-08 16:09:18.783063

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Uploaded within the last 14 days with 2 or fewer community votes — little peer review so far.

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Low Few votes, recently uploaded zero_votes_recent

Uploaded within the last 14 days with 2 or fewer community votes — little peer review so far.

PKGBUILD

      1# Maintainer: imjiaoyuan <imjiaoyuan@gmail.com>
    
      2
    
      3pkgname=psmc
    
      4pkgver=0.6.5
    
      5pkgrel=1
    
      6pkgdesc="Implementation of the Pairwise Sequentially Markovian Coalescent model"
    
      7arch=('x86_64')
    
      8url="https://github.com/lh3/psmc"
    
      9license=('MIT')
    
      10depends=('glibc' 'perl' 'zlib')
    
      11source=("$pkgname-$pkgver.tar.gz::$url/archive/$pkgver.tar.gz")
    
      12sha256sums=('0954b3e28dda4ae350bdb9ebe9eeb3afb3a6d4448cf794dac3b4fde895c3489b')
    
      13
    
      14build() {
    
      15    cd "$srcdir/$pkgname-$pkgver"
    
      16    make
    
      17    # utils/ carries the helpers the documented workflow needs (fq2psmcfa, ...)
    
      18    make -C utils
    
      19}
    
      20
    
      21package() {
    
      22    cd "$srcdir/$pkgname-$pkgver"
    
      23    install -d "$pkgdir/usr/bin"
    
      24    install -m755 psmc "$pkgdir/usr/bin/psmc"
    
      25    install -m755 utils/cntcpg utils/fq2psmcfa utils/splitfa utils/calD utils/mutDiff \
    
      26        "$pkgdir/usr/bin/"
    
      27    install -m755 utils/*.pl "$pkgdir/usr/bin/"
    
      28    install -Dm644 LICENSE.txt "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
    
      29}
    
      30

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Scanned at (UTC)	Severity	Rules
2026-10-08 16:09:18	Low	1