python-rnanorm

LOW

maintainer Smoolak 0 votes scanned 2026-11-01 20:01:18.389276

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Uploaded within the last 14 days with 2 or fewer community votes — little peer review so far.

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Low Few votes, recently uploaded zero_votes_recent

Uploaded within the last 14 days with 2 or fewer community votes — little peer review so far.

PKGBUILD

      1# Maintainer: Smoolak <smoolak@gmail.com>
    
      2
    
      3pkgname=python-rnanorm
    
      4pkgver=2.2.0
    
      5pkgrel=1
    
      6pkgdesc='Common RNA-seq normalization methods'
    
      7arch=(any)
    
      8url=https://github.com/genialis/RNAnorm
    
      9license=(Apache-2.0)
    
      10depends=('python' 'python-click' 'python-numpy' 'python-pandas' 'python-scipy' 'python-scikit-learn>=1.6.0' 'python-pandera')
    
      11makedepends=('python-build' 'python-installer' 'python-setuptools' 'python-setuptools-scm' 'python-wheel')
    
      12checkdepends=('python-pytest')
    
      13_commit=abea2c187634465038900b64ac74715a35d871c1
    
      14source=("$pkgname-$pkgver.tar.gz::$url/archive/$_commit.tar.gz")
    
      15sha256sums=('38176d0e7d7f9b59357f882d276d0182acd596dfaaf54176b58d416b501a50eb')
    
      16
    
      17prepare() {
    
      18  cd "RNAnorm-$_commit"
    
      19  # Trial current Arch Python with the complete upstream suite.
    
      20  # Upstream currently caps Python below 3.14 without a runtime API guard.
    
      21  sed -i 's/>=3.9, <3.14/>=3.9, <3.15/' pyproject.toml
    
      22}
    
      23
    
      24build() {
    
      25  cd "RNAnorm-$_commit"
    
      26  SETUPTOOLS_SCM_PRETEND_VERSION="$pkgver" python -m build --wheel --no-isolation
    
      27}
    
      28
    
      29check() {
    
      30  python -m venv --system-site-packages --without-pip "$srcdir/check-env"
    
      31  "$srcdir/check-env/bin/python" -m installer "RNAnorm-$_commit"/dist/*.whl
    
      32  PATH="$srcdir/check-env/bin:$PATH" MPLBACKEND=Agg "$srcdir/check-env/bin/python" -I -m pytest --import-mode=importlib -v \
    
      33    "RNAnorm-$_commit/tests" --junitxml="$srcdir/pytest-results.xml"
    
      34}
    
      35
    
      36package() {
    
      37  cd "RNAnorm-$_commit"
    
      38  python -m installer --destdir="$pkgdir" dist/*.whl
    
      39  install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
    
      40}
    
      41

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Scanned at (UTC)	Severity	Rules
2026-11-01 20:01:18	Low	1