rmotifgen

LOW

maintainer orphaned 0 votes scanned 2026-11-01 00:21:48.120785

View on AUR

Why flagged

The source is a tarball from a university-hosted project page, which is plausibly the official project infrastructure; building from source is standard practice, and the checksums are provided, making this a low-risk, typical AUR package despite the non-whitelisted host.

Triggered rules

Low AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 90%): The source is a tarball from a university-hosted project page, which is plausibly the official project infrastructure; building from source is standard practice, and the checksums are provided, making this a low-risk, typical AUR package despite the non-whitelisted host.

1 higher static finding superseded - not the current verdict (shown for transparency)

Medium source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:10 source=("http://bioinformatics.louisville.edu/localresources/software/rMotifGen${pkgver}.tar.gz"

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: allencch <allencch at hotmail dot com>
    
      2pkgname=rmotifgen
    
      3pkgver=3.0
    
      4pkgrel=4
    
      5pkgdesc="Random motif sequence generator for genomic sequences"
    
      6arch=('i686' 'x86_64')
    
      7url="http://bioinformatics.louisville.edu/rMotifGen.html"
    
      8license=('GPL')
    
      9depends=()
    
      10source=("http://bioinformatics.louisville.edu/localresources/software/rMotifGen${pkgver}.tar.gz"
    
      11        "source.patch")
    
      12md5sums=('b8b43a6cfd3c8ade4eee3306c9661eda'
    
      13         'b3317f939d7a21c84dd3acc48319ce49')
    
      14
    
      15build() {
    
      16    cd "${srcdir}/rMotifGen_v${pkgver}"
    
      17    sed -i -e 's|PAM1\.prob|/opt/rMotifGen/PAM1.prob|' SubstitutionMatrices.cpp
    
      18    patch -p1 -u -l < ../source.patch
    
      19    make
    
      20}
    
      21
    
      22package() {
    
      23    mkdir -p "${pkgdir}/usr/bin"
    
      24    mkdir -p "${pkgdir}/opt/rMotifGen"
    
      25    cd "${srcdir}/rMotifGen_v${pkgver}"
    
      26    install -m755 rMotifGen "${pkgdir}/usr/bin"
    
      27    cp PAM1.prob README *.PSSM AAinput.dat DNAinput.dat "${pkgdir}/opt/rMotifGen"
    
      28}
    
      29

Scan history

Scanned at (UTC)	Severity	Rules
2026-11-01 00:21:48	Low	2
2026-10-31 00:07:41	Low	2
2026-10-30 00:29:30	Low	2
2026-10-29 00:13:55	Low	2
2026-10-28 00:06:54	Low	2
2026-10-27 00:23:28	Low	2
2026-10-26 00:12:40	Low	2
2026-10-25 00:20:48	Low	2
2026-10-24 00:14:55	Low	2
2026-10-23 00:02:19	Low	2
2026-10-22 00:13:10	Low	2
2026-10-21 00:12:50	Low	2
2026-10-20 00:10:31	Low	2
2026-10-19 00:03:55	Low	2
2026-10-18 00:06:55	Low	2
2026-10-17 00:21:55	Low	2
2026-10-16 00:12:47	Low	2
2026-10-15 00:28:05	Low	2
2026-10-14 00:06:47	Low	2
2026-10-13 00:23:45	Low	2