rmotifgen

LOW

maintainer orphaned 0 votes scanned 2026-09-17 00:27:14.276658

View on AUR

Why flagged

The source is a tarball from a university-hosted project page, which is plausibly the official project infrastructure; building from source is standard practice, and the checksums are provided, making this a low-risk, typical AUR package despite the non-whitelisted host.

Triggered rules

Low AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 90%): The source is a tarball from a university-hosted project page, which is plausibly the official project infrastructure; building from source is standard practice, and the checksums are provided, making this a low-risk, typical AUR package despite the non-whitelisted host.

1 higher static finding superseded - not the current verdict (shown for transparency)

Medium source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:10 source=("http://bioinformatics.louisville.edu/localresources/software/rMotifGen${pkgver}.tar.gz"

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: allencch <allencch at hotmail dot com>
    
      2pkgname=rmotifgen
    
      3pkgver=3.0
    
      4pkgrel=4
    
      5pkgdesc="Random motif sequence generator for genomic sequences"
    
      6arch=('i686' 'x86_64')
    
      7url="http://bioinformatics.louisville.edu/rMotifGen.html"
    
      8license=('GPL')
    
      9depends=()
    
      10source=("http://bioinformatics.louisville.edu/localresources/software/rMotifGen${pkgver}.tar.gz"
    
      11        "source.patch")
    
      12md5sums=('b8b43a6cfd3c8ade4eee3306c9661eda'
    
      13         'b3317f939d7a21c84dd3acc48319ce49')
    
      14
    
      15build() {
    
      16    cd "${srcdir}/rMotifGen_v${pkgver}"
    
      17    sed -i -e 's|PAM1\.prob|/opt/rMotifGen/PAM1.prob|' SubstitutionMatrices.cpp
    
      18    patch -p1 -u -l < ../source.patch
    
      19    make
    
      20}
    
      21
    
      22package() {
    
      23    mkdir -p "${pkgdir}/usr/bin"
    
      24    mkdir -p "${pkgdir}/opt/rMotifGen"
    
      25    cd "${srcdir}/rMotifGen_v${pkgver}"
    
      26    install -m755 rMotifGen "${pkgdir}/usr/bin"
    
      27    cp PAM1.prob README *.PSSM AAinput.dat DNAinput.dat "${pkgdir}/opt/rMotifGen"
    
      28}
    
      29

Scan history

Scanned at (UTC)	Severity	Rules
2026-09-17 00:27:14	Low	2
2026-09-16 00:03:17	Low	2
2026-09-15 00:25:31	Low	2
2026-09-14 00:27:57	Low	2
2026-09-13 00:19:54	Low	2
2026-09-12 00:25:17	Low	2
2026-09-11 00:19:22	Low	2
2026-09-10 00:22:44	Low	2
2026-09-09 00:04:09	Low	2
2026-09-08 00:18:08	Low	2
2026-09-07 00:30:15	Low	2
2026-09-06 00:17:06	Low	2
2026-09-05 00:16:27	Low	2
2026-09-04 00:03:13	Low	2
2026-09-03 00:15:47	Low	2
2026-09-02 00:02:31	Low	2
2026-09-01 00:11:19	Low	2
2026-08-31 00:19:57	Low	2
2026-08-30 00:04:14	Low	2
2026-08-29 00:29:17	Low	2