seqan

LOW

maintainer kleintux 5 votes scanned 2026-09-17 00:27:14.276658

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Why flagged

The package downloads a source tarball from the project's official domain (seqan.de), which is not on the standard whitelist but is plausibly legitimate; the source is a C++ library header collection, not an executable, and the build process is a straightforward install of headers and docs.

Triggered rules

Low AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The package downloads a source tarball from the project's official domain (seqan.de), which is not on the standard whitelist but is plausibly legitimate; the source is a C++ library header collection, not an executable, and the build process is a straightforward install of headers and docs.

1 higher static finding superseded - not the current verdict (shown for transparency)

Medium source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:12 source=("http://packages.seqan.de/seqan-library/${pkgname}-library-${pkgver}.tar.xz")

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: kleintux <reg-archlinux AT klein DOT tuxli DOT ch> 
    
      2# Contributor: Decrypted Epsilon <decrypted.epsilon (at) gmail (dot) com>
    
      3
    
      4pkgname=seqan
    
      5pkgver=2.4.0
    
      6pkgrel=1
    
      7pkgdesc="SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data"
    
      8arch=("any")
    
      9url="http://www.seqan.de"
    
      10license=('BSD')
    
      11# depends=()
    
      12source=("http://packages.seqan.de/seqan-library/${pkgname}-library-${pkgver}.tar.xz")
    
      13sha256sums=('dd97b1514ab83acb7d7be911b157979e188e8ca72cc61c430c1e0fd03bcd41a5')
    
      14
    
      15package() {
    
      16    mkdir -p ${pkgdir}/usr/share/doc/${pkgname}
    
      17    mkdir -p ${pkgdir}/usr/include/${pkgname}
    
      18    cp -rf "${srcdir}/${pkgname}-library-${pkgver}/include/${pkgname}/" ${pkgdir}/usr/include/
    
      19    cp -rf "${srcdir}/${pkgname}-library-${pkgver}/share/doc/${pkgname}/" ${pkgdir}/usr/share/doc/
    
      20}
    
      21

Scan history

Scanned at (UTC)	Severity	Rules
2026-09-17 00:27:14	Low	2
2026-09-16 00:03:17	Low	2
2026-09-15 00:25:31	Low	2
2026-09-14 00:27:57	Low	2
2026-09-13 00:19:54	Low	2
2026-09-12 00:25:17	Low	2
2026-09-11 00:19:22	Low	2
2026-09-10 00:22:44	Low	2
2026-09-09 00:04:09	Low	2
2026-09-08 00:18:08	Low	2
2026-09-07 00:30:15	Low	2
2026-09-06 00:17:06	Low	2
2026-09-05 00:16:27	Low	2
2026-09-04 00:03:13	Low	2
2026-09-03 00:15:47	Low	2
2026-09-02 00:02:31	Low	2
2026-09-01 00:11:19	Low	2
2026-08-31 00:19:57	Low	2
2026-08-30 00:04:14	Low	2
2026-08-29 00:29:17	Low	2