tnt-bio

maintainer malacology · 1 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The package downloads a source archive from a project-specific academic host (lillo.org.ar) which is plausibly the official source; the binary is built locally and installed as intended, with no evidence of malicious or remote code execution, though the skipped checksum reduces verifiability.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The package downloads a source archive from a project-specific academic host (lillo.org.ar) which is plausibly the official source; the binary is built locally and installed as intended, with no evidence of malicious or remote code execution, though the skipped checksum reduces verifiability.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:17 source=("http://www.lillo.org.ar/phylogeny/tnt/tnt-linux.zip")

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Malacology <guoyizhang at malacology dot net>
    
      2# Contributor: Malacology <guoyizhang at malacology dot net>
    
      3
    
      4pkgbase=tnt-bio
    
      5pkgname=('tnt-bio' 
    
      6	'tnt-mpi'
    
      7	'tnt-gui'
    
      8	'tnt-extra')
    
      9pkgver=1.6
    
      10pkgrel=1
    
      11pkgdesc="Tree analysis using New Technology. https://doi.org/10.1111/cla.12160"
    
      12arch=('x86_64')
    
      13url="http://www.lillo.org.ar/phylogeny/tnt/"
    
      14license=('custom')
    
      15makedepends=('unzip')
    
      16depends=('ncurses5-compat-libs')
    
      17source=("http://www.lillo.org.ar/phylogeny/tnt/tnt-linux.zip")
    
      18sha256sums=('SKIP')
    
      19prepare () {
    
      20	cd $srcdir/TNT-Docs_n_Datasets
    
      21	chmod a+r $srcdir/TNT-Docs_n_Datasets -R
    
      22	unzip tnt_scripts.zip -d ./tnt_scripts
    
      23}
    
      24package_tnt-bio () {
    
      25  depends=('ncurses5-compat-libs' 'glibc')
    
      26	cd ${srcdir}/TNT-bin
    
      27	chmod +x tnt
    
      28	install -Dm 755 tnt ${pkgdir}/usr/bin/tnt
    
      29}
    
      30package_tnt-mpi () {
    
      31  depends=('ncurses5-compat-libs' 'pvm' 'openmpi' 'glibc')
    
      32	cd ${srcdir}/TNT-bin
    
      33	chmod +x mpitnt
    
      34	install -Dm 755 mpitnt ${pkgdir}/usr/bin/mpitnt
    
      35}
    
      36package_tnt-gui () {
    
      37  depends=('ncurses5-compat-libs' 'gtk3' 'glibc')
    
      38  optdepends=('pvm')
    
      39	cd ${srcdir}/TNT-bin
    
      40	chmod +x gTNT
    
      41	install -Dm 755 gTNT ${pkgdir}/usr/bin/gTNT
    
      42}
    
      43package_tnt-extra () {
    
      44	install -dm755 $pkgdir/usr/share/tnt/
    
      45
    
      46	cd $srcdir/
    
      47	# PDF
    
      48	install -Dm 755 README_FIRST.pdf $pkgdir/usr/share/tnt/
    
      49
    
      50	cd $srcdir/TNT-Docs_n_Datasets
    
      51	# script
    
      52	mv $srcdir/TNT-Docs_n_Datasets/tnt_scripts $pkgdir/usr/share/tnt/
    
      53	# font
    
      54	install -Dm 755 Tred.ttf ${pkgdir}/usr/share/fonts/Tred/Tred.ttf
    
      55	# html
    
      56	mv $srcdir/TNT-Docs_n_Datasets/*.htm $pkgdir/usr/share/tnt/
    
      57}
    
      58

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2