transtermhp

LOW

maintainer kbipinkumar 0 votes scanned 2026-09-17 00:27:14.276658

View on AUR

Why flagged

The source is a zip file from the project's official domain (transterm.cbcb.umd.edu), which hosts the upstream software; building from this source is standard practice, and the tool is compiled from source, not a prebuilt binary, so the risk is low despite the non-whitelisted host.

Triggered rules

Low AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a zip file from the project's official domain (transterm.cbcb.umd.edu), which hosts the upstream software; building from this source is standard practice, and the tool is compiled from source, not a prebuilt binary, so the risk is low despite the non-whitelisted host.

1 higher static finding superseded - not the current verdict (shown for transparency)

Medium source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:13 source=("http://transterm.cbcb.umd.edu/transterm_hp_v${pkgver}.zip"

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: bipin kumar <bipin@ccmb.res.in>
    
      2
    
      3pkgname=transtermhp
    
      4pkgver=2.09
    
      5pkgrel=1
    
      6pkgdesc="Find rho-independent transcription terminators in bacterial genomes"
    
      7arch=('i686' 'x86_64')
    
      8url="http://transterm.cbcb.umd.edu/index.php"
    
      9license=('GPL')
    
      10depends=('gcc-libs')
    
      11makedepends=('quilt')
    
      12provides=('2ndscore')
    
      13source=("http://transterm.cbcb.umd.edu/transterm_hp_v${pkgver}.zip"
    
      14        "series"
    
      15        "0002-read_seq-return-NULL-instead-of-false.patch"
    
      16        "2to3.patch"
    
      17        "0003-Don-t-overwrite-CXXFLAGS.patch"
    
      18        "hardening.patch"
    
      19        )
    
      20b2sums=('c4553c96dac3c3b06a050d540fca15ad0688cb10e905b3b63c33734e398521a692c759b9d79476acf9241cebb0534b40b96d8a015ccb50edbc59f1888769f470'
    
      21        'f17b2afc1ae28d37d1b09de546b992e7064f8aff3400c251242b24bf51fc3ac7eb9abad9043b066655490c0ccab9939320e30d38115c81c2819e0d10f608ad6e'
    
      22        'eb798aa12ac2ecc129675cc40c08d0db09a9e66b693aaf04f9ab6b71b6e87eb111187af548b28a6d51068611565c056699e7531d909774e74eaf3f1c696b7ed1'
    
      23        'e028abf8bc84dafd879b1a0a9c1281624ee5bc2a6248012a4841c4ad6a782e3bc9c1ec97b31bedeee83bcbc71b6fc966aa3858120cabafd9ca1fc5b65de78cdb'
    
      24        'efd9062df280d010277147853f9ebb61fec1985355535746c26b7d9055498a24242dfb5001a2fb4dc7e3a217755b70242f4dd882678bcf2c6986ced8de5522d3'
    
      25        '013afe630df1ef74dc569f938619ff5b7174f8aabd20cb2362b308ab3684462a9c65f03e78fb29430626b4ca6760f7a99afe1b37e22f5fe3edae83cc9e85bf24')
    
      26
    
      27prepare (){
    
      28    # Copy patches (courtesy debian med project https://launchpad.net/ubuntu/+source/transtermhp/2.09-5)
    
      29    mkdir -p transterm_hp_v${pkgver}/patches
    
      30    cp *.patch transterm_hp_v${pkgver}/patches
    
      31    cp series transterm_hp_v${pkgver}/patches
    
      32    cd transterm_hp_v${pkgver}
    
      33    quilt push -a
    
      34
    
      35}
    
      36
    
      37build() {
    
      38  cd transterm_hp_v${pkgver}
    
      39  make clean transterm 2ndscore
    
      40}
    
      41
    
      42package() {
    
      43  cd transterm_hp_v${pkgver}
    
      44    install -D -m755 transterm "$pkgdir"/usr/bin/transterm
    
      45    install -D -m755 2ndscore "$pkgdir"/usr/bin/2ndscore
    
      46}
    
      47

Scan history

Scanned at (UTC)	Severity	Rules
2026-09-17 00:27:14	Low	2
2026-09-16 00:03:17	Low	2
2026-09-15 00:25:31	Low	2
2026-09-14 00:27:57	Low	2
2026-09-13 00:19:54	Low	2
2026-09-12 00:25:17	Low	2
2026-09-11 00:19:22	Low	2
2026-09-10 00:22:44	Low	2
2026-09-09 00:04:09	Low	2
2026-09-08 00:18:08	Low	2
2026-09-07 00:30:15	Low	2
2026-09-06 00:17:06	Low	2
2026-09-05 00:16:27	Low	2
2026-09-04 00:03:13	Low	2
2026-09-03 00:15:47	Low	2
2026-09-02 00:02:31	Low	2
2026-09-01 00:11:19	Low	2
2026-08-31 00:19:57	Low	2
2026-08-30 00:04:14	Low	2
2026-08-29 00:29:17	Low	2