tree-puzzle

maintainer malacology · 0 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is downloaded from the project's official domain (tree-puzzle.de), which is not on standard whitelists but is plausibly legitimate; the package builds from source and installs only the project's own code and documentation.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is downloaded from the project's official domain (tree-puzzle.de), which is not on standard whitelists but is plausibly legitimate; the package builds from source and installs only the project's own code and documentation.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:12 source=("${pkgname}-${pkgver}.tgz::http://www.tree-puzzle.de/tree-puzzle-${pkgver}.tar.gz"

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Guoyi Zhang <myname at malacology dot net>
    
      2
    
      3pkgname=tree-puzzle
    
      4pkgver=5.3.rc16
    
      5pkgrel=1
    
      6arch=('x86_64')
    
      7pkgdesc="Maximum likelihood analysis for nucleotide, amino acid, and two-state data"
    
      8url='http://www.tree-puzzle.de/'
    
      9license=('GPL-2.0-only')
    
      10depends=('openmpi' 'glibc')
    
      11makedepends=('make' 'autoconf')
    
      12source=("${pkgname}-${pkgver}.tgz::http://www.tree-puzzle.de/tree-puzzle-${pkgver}.tar.gz"
    
      13	"ppuzzle.patch")
    
      14sha1sums=('deff2968611b9726f189d8babfd9bb908fc21a5b'
    
      15          '3557851bcabc5afc58a81a966bc48c7f9d6f1506')
    
      16
    
      17prepare() {
    
      18  cd $srcdir/$pkgname-$pkgver
    
      19  patch -p1 < $srcdir/ppuzzle.patch
    
      20}
    
      21
    
      22build() {
    
      23  cd $srcdir/$pkgname-$pkgver
    
      24  autoupdate
    
      25  autoreconf -i
    
      26  ./configure --prefix=/usr
    
      27  make -j1
    
      28}
    
      29
    
      30package() {
    
      31  cd $srcdir/$pkgname-$pkgver
    
      32  # binary
    
      33  make DESTDIR="${pkgdir}" install
    
      34  # docs
    
      35  install -Dm 644 doc/*.pdf $pkgdir/usr/share/doc/$pkgname/manual.pdf  
    
      36}
    
      37

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2