trimmomatic

maintainer ZJLIN · 3 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The package downloads a source archive from a non-whitelisted but project-associated host (usadellab.org) which is the official site for Trimmomatic; the archive is verified with a matching md5sum, and the build installs only the project's own code, which is normal for AUR packages.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The package downloads a source archive from a non-whitelisted but project-associated host (usadellab.org) which is the official site for Trimmomatic; the archive is verified with a matching md5sum, and the build installs only the project's own code, which is normal for AUR packages.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:10 source=("http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-$pkgver.zip"

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: ZJLIN <zjin841126@gmail.com>
    
      2pkgname=trimmomatic
    
      3pkgver=0.39
    
      4pkgrel=1
    
      5pkgdesc='Trimmomatic: A flexible read trimming tool for Illumina NGS data'
    
      6arch=('any')
    
      7url="http://www.usadellab.org/cms/?page=trimmomatic"
    
      8license=('GPL3')
    
      9depends=('java-environment>=6')
    
      10source=("http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-$pkgver.zip"
    
      11        "trimmomatic"
    
      12        )
    
      13md5sums=('271ed9dca91132eee0c960e0ae487bcd'
    
      14         'f48f380f206cb5f85bc25b8cf2c35d99')
    
      15
    
      16package() {
    
      17    mkdir $pkgdir/opt/
    
      18    mv $srcdir/Trimmomatic-$pkgver $srcdir/Trimmomatic
    
      19    cp -r $srcdir/Trimmomatic/ $pkgdir/opt/
    
      20
    
      21    mkdir -p "${pkgdir}/usr/bin/"
    
      22    install $srcdir/trimmomatic $pkgdir/usr/bin
    
      23}
    
      24

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2