weblogo2

maintainer orphaned · 0 votes · scanned 2026-08-03 00:08:14.047287

LOW

Why flagged The source is a tarball from the project's official domain (berkeley.edu) hosting its own release; building from official project sources is normal for AUR packages, even if the host isn't whitelisted.

Triggered rules

LOW AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a tarball from the project's official domain (berkeley.edu) hosting its own release; building from official project sources is normal for AUR packages, even if the host isn't whitelisted.

1 higher static finding superseded - not the current verdict (shown for transparency)

MEDIUM source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:11 source=("http://weblogo.berkeley.edu/release/weblogo.2.8.2.tar.gz")

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Grey Christoforo <first name [at] last name [dot] net>
    
      2
    
      3pkgname=weblogo2
    
      4pkgver=2.8.2
    
      5pkgrel=1
    
      6pkgdesc="A web based application designed to make the generation of sequence logos as easy and painless as possible"
    
      7url="http://weblogo.berkeley.edu//"
    
      8arch=('i686' 'x86_64')
    
      9license=('custom (MIT)')
    
      10depends=('ghostscript' 'perl')
    
      11source=("http://weblogo.berkeley.edu/release/weblogo.2.8.2.tar.gz")
    
      12md5sums=('12886e0f41757e32ac2823d0f990ce0c')
    
      13
    
      14prepare(){
    
      15# patch to allow perl to resolve through the link we're going to make
    
      16sed -i 's,$Bin,$RealBin,g' ${srcdir}/weblogo/seqlogo
    
      17}
    
      18
    
      19package() {
    
      20# put the src into opt
    
      21mkdir -p "${pkgdir}/opt/${pkgname}"
    
      22cp -a ${srcdir}/weblogo/* "${pkgdir}/opt/${pkgname}/."
    
      23
    
      24# link the exe
    
      25mkdir -p ${pkgdir}/usr/bin
    
      26ln -s /opt/${pkgname}/seqlogo ${pkgdir}/usr/bin/.
    
      27
    
      28# install license file
    
      29install -m644 -D "${srcdir}/weblogo/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
    
      30}
    
      31
    
      32# vim:set ts=2 sw=2 et:#
    
      33
    
      34

Scan history

Scanned at (UTC)	Severity	Rules
2026-08-03 00:08:14	LOW	2
2026-08-02 00:16:08	LOW	2
2026-08-01 00:11:18	LOW	2
2026-07-31 00:14:10	LOW	2
2026-07-30 00:17:23	LOW	2
2026-07-29 00:25:53	LOW	2
2026-07-28 00:07:28	LOW	2
2026-07-27 00:24:32	LOW	2
2026-07-26 00:07:32	LOW	2
2026-07-25 00:13:44	LOW	2
2026-07-24 00:02:28	LOW	2
2026-07-23 00:14:47	LOW	2
2026-07-22 00:29:32	LOW	2
2026-07-21 00:24:15	LOW	2
2026-07-20 00:19:49	LOW	2
2026-07-19 00:17:08	LOW	2
2026-07-18 00:14:48	LOW	2
2026-07-17 00:06:16	LOW	2
2026-07-16 00:05:41	LOW	2
2026-07-15 00:09:25	LOW	2