weblogo2

LOW

maintainer orphaned 0 votes scanned 2026-09-17 00:27:14.276658

View on AUR

Why flagged

The source is a tarball from the project's official domain (berkeley.edu) hosting its own release; building from official project sources is normal for AUR packages, even if the host isn't whitelisted.

Triggered rules

Low AI review downgraded a static finding llm_review

The static rules flagged this MEDIUM, but an AI model (qwen/qwen3-235b-a22b-07-25) reviewed the full PKGBUILD and judged it LOW (confidence 95%): The source is a tarball from the project's official domain (berkeley.edu) hosting its own release; building from official project sources is normal for AUR packages, even if the host isn't whitelisted.

1 higher static finding superseded - not the current verdict (shown for transparency)

Medium source=() URL on a non-standard host source_untrusted_domain

One or more source=() URLs point to a host outside the trusted allowlist (github.com, gitlab.com, codeberg.org, pypi.org, …).

PKGBUILD:11 source=("http://weblogo.berkeley.edu/release/weblogo.2.8.2.tar.gz")

PKGBUILD

1 offending line(s) highlighted

      1# Maintainer: Grey Christoforo <first name [at] last name [dot] net>
    
      2
    
      3pkgname=weblogo2
    
      4pkgver=2.8.2
    
      5pkgrel=1
    
      6pkgdesc="A web based application designed to make the generation of sequence logos as easy and painless as possible"
    
      7url="http://weblogo.berkeley.edu//"
    
      8arch=('i686' 'x86_64')
    
      9license=('custom (MIT)')
    
      10depends=('ghostscript' 'perl')
    
      11source=("http://weblogo.berkeley.edu/release/weblogo.2.8.2.tar.gz")
    
      12md5sums=('12886e0f41757e32ac2823d0f990ce0c')
    
      13
    
      14prepare(){
    
      15# patch to allow perl to resolve through the link we're going to make
    
      16sed -i 's,$Bin,$RealBin,g' ${srcdir}/weblogo/seqlogo
    
      17}
    
      18
    
      19package() {
    
      20# put the src into opt
    
      21mkdir -p "${pkgdir}/opt/${pkgname}"
    
      22cp -a ${srcdir}/weblogo/* "${pkgdir}/opt/${pkgname}/."
    
      23
    
      24# link the exe
    
      25mkdir -p ${pkgdir}/usr/bin
    
      26ln -s /opt/${pkgname}/seqlogo ${pkgdir}/usr/bin/.
    
      27
    
      28# install license file
    
      29install -m644 -D "${srcdir}/weblogo/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
    
      30}
    
      31
    
      32# vim:set ts=2 sw=2 et:#
    
      33
    
      34

Scan history

Scanned at (UTC)	Severity	Rules
2026-09-17 00:27:14	Low	2
2026-09-16 00:03:17	Low	2
2026-09-15 00:25:31	Low	2
2026-09-14 00:27:57	Low	2
2026-09-13 00:19:54	Low	2
2026-09-12 00:25:17	Low	2
2026-09-11 00:19:22	Low	2
2026-09-10 00:22:44	Low	2
2026-09-09 00:04:09	Low	2
2026-09-08 00:18:08	Low	2
2026-09-07 00:30:15	Low	2
2026-09-06 00:17:06	Low	2
2026-09-05 00:16:27	Low	2
2026-09-04 00:03:13	Low	2
2026-09-03 00:15:47	Low	2
2026-09-02 00:02:31	Low	2
2026-09-01 00:11:19	Low	2
2026-08-31 00:19:57	Low	2
2026-08-30 00:04:14	Low	2
2026-08-29 00:29:17	Low	2